9/10/2023 0 Comments Cytoscape linuxThere is however a difference with genes that are annotated to categories such as Biological_Process unknown. The genes for which there is no annotation available are not taken into account in the over-representation analysis, and they're not counted as genes belonging to the test or reference set. Given the current status of GO annotation efforts, a lot of genes haven't actually been looked at by a curator and annotated in the GO hierarchy. Q : The number of genes in my test set according to the BiNGO output window does not match with the number of nodes I pasted into the text field or selected in the graph. Try running Cytoscape from cytoscape.bat (Windows) or cytoscape.sh (Linux, Mac), or see here to increase Cytoscape’s default memory settings.
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